/EXTERNAL BLUEPRINT/K011721_1_lane_gembs

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SAMPLE K011721_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 55919492 100.00 % 27959746 100.00 % 27959746 100.00 %
General Reads 53281068 95.28 % 26761073 95.71 % 26519995 94.85 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 2638424 4.72 % 1198673 4.29 % 1439751 5.15 %
Bisulfite_reads C2T 27597647 49.35 % 13859254 49.57 % 13738393 49.14 %
Bisulfite_reads G2A 25683421 45.93 % 12901819 46.14 % 12781602 45.71 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 20073611
Average Unique 71.79 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 1530430785 35.54 % 588316742 27.33 % 942114043 43.76 %
Base Counts Overall C 611482605 14.20 % 84104310 3.91 % 527378295 24.50 %
Base Counts Overall G 623427889 14.48 % 530539695 24.64 % 92888194 4.31 %
Base Counts Overall T 1484407781 34.47 % 921944199 42.82 % 562463582 26.13 %
Base Counts Overall N 56051824 1.30 % 27995496 1.30 % 28056328 1.30 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 24797406



Mapping Quality

Mapping Quality Histogram
K011721_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K011721_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K011721_1894663_2