/EXTERNAL BLUEPRINT/mapping_coverage/K011721_1_lane_gembs
BACK
SAMPLE K011721_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
47255719 |
100% |
3252720572 |
100% |
| Mapped |
46680011 |
98.78 % |
3208966764 |
98.65 % |
| Passed |
29104989 |
61.59 % |
1873265092 |
57.59 % |
| NotPassed |
17575022 |
37.19 % |
1335701672 |
41.06 % |
| |
|
|
|
|
| LowMAPQ |
10975324 |
23.23 % |
834124624 |
25.64 % |
| MateUnmapped |
575708 |
1.22 % |
43753808 |
1.35 % |
| Duplicate |
6037190 |
12.78 % |
458826440 |
14.11 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
1438 |
0.00 % |
109288 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
561070 |
1.19 % |
42641320 |
1.31 % |
| Unmapped |
575708 |
1.22 % |
43753808 |
1.35 % |
Base Level Counts
| Bases |
# |
% |
| Total |
2090871340 |
100% |
| Passed |
1644440647 |
78.65 % |
| Trimmed |
121335256 |
5.80 % |
| Clipped |
5398790 |
0.26 % |
| Overlapping |
212207458 |
10.15 % |
| LowQuality |
107489189 |
5.14 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |