/EXTERNAL BLUEPRINT/methylation/K011721_1_lane_gembs

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SAMPLE K011721_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 13044500 2446 0.02 %
NonRefCpG 888565 5 0.00 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K011721_1_lane_gembs_coverage_refCpG.png ./IMG//K011721_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K011721_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K011721_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K011721_1_lane_gembs_quality_refcpg.png ./IMG//K011721_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K011721_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 2434796 15.76 % 188 2.89 % 219072 22.52 % 0 2.57 %
Intermediate (0.3-0.7) 5624868 36.42 % 1244 19.05 % 369802 38.01 % 4 18.00 %
Methylated (0.7-1) 7385962 47.82 % 5101 78.06 % 383950 39.47 % 19 79.42 %
Median Methylation 0.680 0.860 0.600 0.870