/EXTERNAL BLUEPRINT/K011725_1_lane_gembs

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SAMPLE K011725_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 102937836 100.00 % 51468918 100.00 % 51468918 100.00 %
General Reads 97319058 94.54 % 48997558 95.20 % 48321500 93.88 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1 0.00 % 0 0.00 % 1 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 5618777 5.46 % 2471360 4.80 % 3147417 6.12 %
Bisulfite_reads C2T 50323734 48.89 % 25329769 49.21 % 24993965 48.56 %
Bisulfite_reads G2A 46995325 45.65 % 23667789 45.98 % 23327536 45.32 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 36489098
Average Unique 70.90 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 2805274150 35.39 % 1083646577 27.34 % 1721627573 43.44 %
Base Counts Overall C 1122437445 14.16 % 132652180 3.35 % 989785265 24.97 %
Base Counts Overall G 1158143829 14.61 % 993563183 25.07 % 164580646 4.15 %
Base Counts Overall T 2736668592 34.53 % 1701527556 42.93 % 1035141036 26.12 %
Base Counts Overall N 103689356 1.31 % 51717190 1.30 % 51972166 1.31 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 45013354



Mapping Quality

Mapping Quality Histogram
K011725_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K011725_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K011725_1894667_2