/EXTERNAL BLUEPRINT/mapping_coverage/K011725_1_lane_gembs
BACK
SAMPLE K011725_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
83226152 |
100% |
5764373657 |
100% |
| Mapped |
82113578 |
98.66 % |
5679818033 |
98.53 % |
| Passed |
46478843 |
55.85 % |
2971578173 |
51.55 % |
| NotPassed |
35634735 |
42.82 % |
2708239860 |
46.98 % |
| |
|
|
|
|
| LowMAPQ |
20589508 |
24.74 % |
1564802608 |
27.15 % |
| MateUnmapped |
1112574 |
1.34 % |
84555624 |
1.47 % |
| Duplicate |
14128807 |
16.98 % |
1073789332 |
18.63 % |
| BadOrientation |
4 |
0.00 % |
304 |
0.00 % |
| LargeInsertSize |
2402 |
0.00 % |
182552 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
914014 |
1.10 % |
69465064 |
1.21 % |
| Unmapped |
1112574 |
1.34 % |
84555624 |
1.47 % |
Base Level Counts
| Bases |
# |
% |
| Total |
3350420784 |
100% |
| Passed |
2677663549 |
79.92 % |
| Trimmed |
193714427 |
5.78 % |
| Clipped |
8466021 |
0.25 % |
| Overlapping |
370376590 |
11.05 % |
| LowQuality |
100200197 |
2.99 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |