/EXTERNAL BLUEPRINT/methylation/K011725_1_lane_gembs

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SAMPLE K011725_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 16734394 31802 0.19 %
NonRefCpG 871001 78 0.01 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K011725_1_lane_gembs_coverage_refCpG.png ./IMG//K011725_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K011725_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K011725_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K011725_1_lane_gembs_quality_refcpg.png ./IMG//K011725_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K011725_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 3362885 15.77 % 2920 3.52 % 263634 26.11 % 34 8.03 %
Intermediate (0.3-0.7) 7502563 35.18 % 14967 18.03 % 377961 37.44 % 92 21.25 %
Methylated (0.7-1) 10461585 49.05 % 65148 78.46 % 368025 36.45 % 306 70.72 %
Median Methylation 0.690 0.870 0.560 0.840