/EXTERNAL BLUEPRINT/K011726_1_lane_gembs

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SAMPLE K011726_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 111415922 100.00 % 55707961 100.00 % 55707961 100.00 %
General Reads 105061385 94.30 % 52773370 94.73 % 52288015 93.86 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 8 0.00 % 4 0.00 % 4 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 6354529 5.70 % 2934587 5.27 % 3419942 6.14 %
Bisulfite_reads C2T 54348645 48.78 % 27293983 48.99 % 27054662 48.57 %
Bisulfite_reads G2A 50712748 45.52 % 25479391 45.74 % 25233357 45.30 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 39594303
Average Unique 71.07 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 3046962025 35.52 % 1179244982 27.49 % 1867717043 43.54 %
Base Counts Overall C 1198215393 13.97 % 146569433 3.42 % 1051645960 24.52 %
Base Counts Overall G 1237246909 14.42 % 1058535901 24.68 % 178711008 4.17 %
Base Counts Overall T 2983342407 34.77 % 1848322980 43.09 % 1135019427 26.46 %
Base Counts Overall N 113259260 1.32 % 56839701 1.33 % 56419559 1.32 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 48686243



Mapping Quality

Mapping Quality Histogram
K011726_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K011726_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K011726_1894668_2