/EXTERNAL BLUEPRINT/mapping_coverage/K011726_1_lane_gembs
BACK
SAMPLE K011726_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
90088666 |
100% |
6228985318 |
100% |
| Mapped |
89065849 |
98.86 % |
6151251226 |
98.75 % |
| Passed |
51073960 |
56.69 % |
3263867662 |
52.40 % |
| NotPassed |
37991889 |
42.17 % |
2887383564 |
46.35 % |
| |
|
|
|
|
| LowMAPQ |
21977976 |
24.40 % |
1670326176 |
26.82 % |
| MateUnmapped |
1022817 |
1.14 % |
77734092 |
1.25 % |
| Duplicate |
15009827 |
16.66 % |
1140746852 |
18.31 % |
| BadOrientation |
2 |
0.00 % |
152 |
0.00 % |
| LargeInsertSize |
4022 |
0.00 % |
305672 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
1000062 |
1.11 % |
76004712 |
1.22 % |
| Unmapped |
1022817 |
1.14 % |
77734092 |
1.25 % |
Base Level Counts
| Bases |
# |
% |
| Total |
3666551068 |
100% |
| Passed |
2955634734 |
80.61 % |
| Trimmed |
213209111 |
5.81 % |
| Clipped |
10193012 |
0.28 % |
| Overlapping |
392490394 |
10.70 % |
| LowQuality |
95023817 |
2.59 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |