/EXTERNAL BLUEPRINT/methylation/K011726_1_lane_gembs

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SAMPLE K011726_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 17445039 38172 0.22 %
NonRefCpG 869361 105 0.01 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K011726_1_lane_gembs_coverage_refCpG.png ./IMG//K011726_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K011726_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K011726_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K011726_1_lane_gembs_quality_refcpg.png ./IMG//K011726_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K011726_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 3444106 15.33 % 3092 3.16 % 273152 26.75 % 42 8.14 %
Intermediate (0.3-0.7) 7864741 35.01 % 17560 17.93 % 380852 37.29 % 113 22.00 %
Methylated (0.7-1) 11158096 49.66 % 77277 78.91 % 367316 35.96 % 361 69.87 %
Median Methylation 0.690 0.870 0.560 0.830