/EXTERNAL BLUEPRINT/K011728_K011737_K011738_K011739_K011740_K011741_K011742_K011743_K011744_K011768_K011769_11_lane_gembs/EXTERNAL-K011738_1894680_2
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SAMPLE K011728_K011737_K011738_K011739_K011740_K011741_K011742_K011743_K011744_K011768_K011769_11_lane_gembs LANE EXTERNAL-K011738_1894680_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 18900314 | 100.00 % | 9450157 | 100.00 % | 9450157 | 100.00 % |
| General Reads | 14097383 | 74.59 % | 7128384 | 75.43 % | 6968999 | 73.74 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 2 | 0.00 % | 1 | 0.00 % | 1 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4802929 | 25.41 % | 2321772 | 24.57 % | 2481157 | 26.26 % |
| Bisulfite_reads C2T | 7277548 | 38.50 % | 3679062 | 38.93 % | 3598486 | 38.08 % |
| Bisulfite_reads G2A | 6819837 | 36.08 % | 3449323 | 36.50 % | 3370514 | 35.67 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 5446346 |
| Average Unique | 57.63 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 468740580 | 32.63 % | 191825436 | 26.71 % | 276915144 | 38.56 % |
| Base Counts Overall C | 233133677 | 16.23 % | 61449282 | 8.56 % | 171684395 | 23.90 % |
| Base Counts Overall G | 247956598 | 17.26 % | 179075280 | 24.93 % | 68881318 | 9.59 % |
| Base Counts Overall T | 466786575 | 32.50 % | 276390419 | 38.48 % | 190396156 | 26.51 % |
| Base Counts Overall N | 19806434 | 1.38 % | 9471515 | 1.32 % | 10334919 | 1.44 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 6759365 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 9450157 |
| 75 | 9450157 |
Insert Size Plot
| Insert Size Histogram |
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