/EXTERNAL BLUEPRINT/K011728_K011737_K011738_K011739_K011740_K011741_K011742_K011743_K011744_K011768_K011769_11_lane_gembs/EXTERNAL-K011739_1894681_2
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SAMPLE K011728_K011737_K011738_K011739_K011740_K011741_K011742_K011743_K011744_K011768_K011769_11_lane_gembs LANE EXTERNAL-K011739_1894681_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 17444076 | 100.00 % | 8722038 | 100.00 % | 8722038 | 100.00 % |
| General Reads | 11531981 | 66.11 % | 5835913 | 66.91 % | 5696068 | 65.31 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 5912095 | 33.89 % | 2886125 | 33.09 % | 3025970 | 34.69 % |
| Bisulfite_reads C2T | 5946040 | 34.09 % | 3008129 | 34.49 % | 2937911 | 33.68 % |
| Bisulfite_reads G2A | 5585941 | 32.02 % | 2827784 | 32.42 % | 2758157 | 31.62 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 4446170 |
| Average Unique | 50.98 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 421765945 | 31.81 % | 176798635 | 26.67 % | 244967310 | 36.96 % |
| Base Counts Overall C | 225100889 | 16.98 % | 67799121 | 10.23 % | 157301768 | 23.73 % |
| Base Counts Overall G | 238895427 | 18.02 % | 163066809 | 24.60 % | 75828618 | 11.44 % |
| Base Counts Overall T | 421716814 | 31.81 % | 246468871 | 37.18 % | 175247943 | 26.44 % |
| Base Counts Overall N | 18270701 | 1.38 % | 8741452 | 1.32 % | 9529249 | 1.44 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 5521669 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 8722038 |
| 75 | 8722038 |
Insert Size Plot
| Insert Size Histogram |
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