/EXTERNAL BLUEPRINT/K011728_K011737_K011738_K011739_K011740_K011741_K011742_K011743_K011744_K011768_K011769_11_lane_gembs/EXTERNAL-K011740_1894682_2
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SAMPLE K011728_K011737_K011738_K011739_K011740_K011741_K011742_K011743_K011744_K011768_K011769_11_lane_gembs LANE EXTERNAL-K011740_1894682_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 14978250 | 100.00 % | 7489125 | 100.00 % | 7489125 | 100.00 % |
| General Reads | 7334914 | 48.97 % | 3714668 | 49.60 % | 3620246 | 48.34 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 1 | 0.00 % | 0 | 0.00 % | 1 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 7643335 | 51.03 % | 3774457 | 50.40 % | 3868878 | 51.66 % |
| Bisulfite_reads C2T | 3782914 | 25.26 % | 1915397 | 25.58 % | 1867517 | 24.94 % |
| Bisulfite_reads G2A | 3552001 | 23.71 % | 1799271 | 24.03 % | 1752730 | 23.40 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 2734997 |
| Average Unique | 36.52 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 348291629 | 30.60 % | 156168467 | 27.44 % | 192123162 | 33.75 % |
| Base Counts Overall C | 210594384 | 18.50 % | 80193860 | 14.09 % | 130400524 | 22.91 % |
| Base Counts Overall G | 221054977 | 19.42 % | 134648526 | 23.66 % | 86406451 | 15.18 % |
| Base Counts Overall T | 342695350 | 30.10 % | 190658594 | 33.50 % | 152036756 | 26.71 % |
| Base Counts Overall N | 15710660 | 1.38 % | 7504053 | 1.32 % | 8206607 | 1.44 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 3462055 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 7489125 |
| 75 | 7489125 |
Insert Size Plot
| Insert Size Histogram |
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