/EXTERNAL BLUEPRINT/K011728_K011737_K011738_K011739_K011740_K011741_K011742_K011743_K011744_K011768_K011769_11_lane_gembs/EXTERNAL-K011741_1894683_2
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SAMPLE K011728_K011737_K011738_K011739_K011740_K011741_K011742_K011743_K011744_K011768_K011769_11_lane_gembs LANE EXTERNAL-K011741_1894683_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 11291496 | 100.00 % | 5645748 | 100.00 % | 5645748 | 100.00 % |
| General Reads | 9551539 | 84.59 % | 4853992 | 85.98 % | 4697547 | 83.21 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 1739957 | 15.41 % | 791756 | 14.02 % | 948201 | 16.79 % |
| Bisulfite_reads C2T | 4918367 | 43.56 % | 2498658 | 44.26 % | 2419709 | 42.86 % |
| Bisulfite_reads G2A | 4633172 | 41.03 % | 2355334 | 41.72 % | 2277838 | 40.35 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 3646135 |
| Average Unique | 64.58 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 296880671 | 34.60 % | 116503278 | 27.15 % | 180377393 | 42.04 % |
| Base Counts Overall C | 124648982 | 14.53 % | 22253747 | 5.19 % | 102395235 | 23.86 % |
| Base Counts Overall G | 133706061 | 15.58 % | 107377030 | 25.03 % | 26329031 | 6.14 % |
| Base Counts Overall T | 291093425 | 33.92 % | 177284801 | 41.32 % | 113808624 | 26.52 % |
| Base Counts Overall N | 11824557 | 1.38 % | 5657992 | 1.32 % | 6166565 | 1.44 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 4549896 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 5645748 |
| 75 | 5645748 |
Insert Size Plot
| Insert Size Histogram |
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