/EXTERNAL BLUEPRINT/K011728_K011737_K011738_K011739_K011740_K011741_K011742_K011743_K011744_K011768_K011769_11_lane_gembs/EXTERNAL-K011743_1894685_2
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SAMPLE K011728_K011737_K011738_K011739_K011740_K011741_K011742_K011743_K011744_K011768_K011769_11_lane_gembs LANE EXTERNAL-K011743_1894685_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 17011394 | 100.00 % | 8505697 | 100.00 % | 8505697 | 100.00 % |
| General Reads | 9522841 | 55.98 % | 4842088 | 56.93 % | 4680753 | 55.03 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 3 | 0.00 % | 1 | 0.00 % | 2 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 7488550 | 44.02 % | 3663608 | 43.07 % | 3824942 | 44.97 % |
| Bisulfite_reads C2T | 4914178 | 28.89 % | 2497823 | 29.37 % | 2416355 | 28.41 % |
| Bisulfite_reads G2A | 4608666 | 27.09 % | 2344266 | 27.56 % | 2264400 | 26.62 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 3628963 |
| Average Unique | 42.67 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 405061425 | 31.33 % | 176373824 | 27.28 % | 228687601 | 35.38 % |
| Base Counts Overall C | 223716439 | 17.30 % | 73701383 | 11.40 % | 150015056 | 23.21 % |
| Base Counts Overall G | 237921003 | 18.40 % | 155219579 | 24.01 % | 82701424 | 12.79 % |
| Base Counts Overall T | 408340233 | 31.58 % | 232613248 | 35.98 % | 175726985 | 27.18 % |
| Base Counts Overall N | 17826844 | 1.38 % | 8524938 | 1.32 % | 9301906 | 1.44 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 4515699 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 8505697 |
| 75 | 8505697 |
Insert Size Plot
| Insert Size Histogram |
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