/EXTERNAL BLUEPRINT/K011728_K011737_K011738_K011739_K011740_K011741_K011742_K011743_K011744_K011768_K011769_11_lane_gembs/EXTERNAL-K011744_1894686_2
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SAMPLE K011728_K011737_K011738_K011739_K011740_K011741_K011742_K011743_K011744_K011768_K011769_11_lane_gembs LANE EXTERNAL-K011744_1894686_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 14727544 | 100.00 % | 7363772 | 100.00 % | 7363772 | 100.00 % |
| General Reads | 11332166 | 76.95 % | 5734748 | 77.88 % | 5597418 | 76.01 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 29 | 0.00 % | 15 | 0.00 % | 14 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 3395349 | 23.05 % | 1629009 | 22.12 % | 1766340 | 23.99 % |
| Bisulfite_reads C2T | 5842005 | 39.67 % | 2955678 | 40.14 % | 2886327 | 39.20 % |
| Bisulfite_reads G2A | 5490190 | 37.28 % | 2779085 | 37.74 % | 2711105 | 36.82 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 4399613 |
| Average Unique | 59.75 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 366858588 | 32.78 % | 149539941 | 26.72 % | 217318647 | 38.83 % |
| Base Counts Overall C | 179209359 | 16.01 % | 46641177 | 8.33 % | 132568182 | 23.69 % |
| Base Counts Overall G | 190284923 | 17.00 % | 137251706 | 24.52 % | 53033217 | 9.48 % |
| Base Counts Overall T | 367496774 | 32.83 % | 218833818 | 39.10 % | 148662956 | 26.56 % |
| Base Counts Overall N | 15443700 | 1.38 % | 7380030 | 1.32 % | 8063670 | 1.44 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 5448400 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 7363772 |
| 75 | 7363772 |
Insert Size Plot
| Insert Size Histogram |
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