/EXTERNAL BLUEPRINT/K011728_K011737_K011738_K011739_K011740_K011741_K011742_K011743_K011744_K011768_K011769_11_lane_gembs

BACK

SAMPLE K011728_K011737_K011738_K011739_K011740_K011741_K011742_K011743_K011744_K011768_K011769_11_lane_gembs

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	324459346	100.00 %	162229673	100.00 %	162229673	100.00 %
General Reads	273885355	84.41 %	138417790	85.32 %	135467565	83.50 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	58	0.00 %	28	0.00 %	30	0.00 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	50573933	15.59 %	23811855	14.68 %	26762078	16.50 %
Bisulfite_reads C2T	141330338	43.56 %	71405758	44.02 %	69924580	43.10 %
Bisulfite_reads G2A	132555075	40.85 %	67012060	41.31 %	65543015	40.40 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	105476347
Average Unique	65.02 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	8414580665	34.12 %	3395752957	27.54 %	5018827708	40.71 %
Base Counts Overall C	3685921856	14.95 %	798659806	6.48 %	2887262050	23.42 %
Base Counts Overall G	3899787113	15.81 %	2986331087	24.22 %	913456026	7.41 %
Base Counts Overall T	8318644349	33.73 %	4986119926	40.44 %	3332524423	27.03 %
Base Counts Overall N	339976313	1.38 %	162591372	1.32 %	177384941	1.44 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	NA
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	130769324

Mapping Quality

Mapping Quality Histogram

Insert Size Plot

Insert Size Histogram

Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K011743_1894685_2
EXTERNAL-K011742_1894684_2
EXTERNAL-K011739_1894681_2
EXTERNAL-K011769_1894711_2
EXTERNAL-K011728_1894670_2
EXTERNAL-K011737_1894679_2
EXTERNAL-K011738_1894680_2
EXTERNAL-K011744_1894686_2
EXTERNAL-K011768_1894710_2
EXTERNAL-K011741_1894683_2
EXTERNAL-K011740_1894682_2