/EXTERNAL BLUEPRINT/mapping_coverage/K011728_K011737_K011738_K011739_K011740_K011741_K011742_K011743_K011744_K011768_K011769_11_lane_gembs
BACK
SAMPLE K011728_K011737_K011738_K011739_K011740_K011741_K011742_K011743_K011744_K011768_K011769_11_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
222430256 |
100% |
15680021417 |
100% |
| Mapped |
217999308 |
98.01 % |
15347700317 |
97.88 % |
| Passed |
113298970 |
50.94 % |
7495174967 |
47.80 % |
| NotPassed |
104700338 |
47.07 % |
7852525350 |
50.08 % |
| |
|
|
|
|
| LowMAPQ |
50304834 |
22.62 % |
3772862550 |
24.06 % |
| MateUnmapped |
4430948 |
1.99 % |
332321100 |
2.12 % |
| Duplicate |
51482393 |
23.15 % |
3861179475 |
24.62 % |
| BadOrientation |
4 |
0.00 % |
300 |
0.00 % |
| LargeInsertSize |
16534 |
0.01 % |
1240050 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
2896573 |
1.30 % |
217242975 |
1.39 % |
| Unmapped |
4430948 |
1.99 % |
332321100 |
2.12 % |
Base Level Counts
| Bases |
# |
% |
| Total |
8063351925 |
100% |
| Passed |
6644967571 |
82.41 % |
| Trimmed |
486545544 |
6.03 % |
| Clipped |
24760236 |
0.31 % |
| Overlapping |
543416722 |
6.74 % |
| LowQuality |
363661852 |
4.51 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |