/EXTERNAL BLUEPRINT/methylation/K011728_K011737_K011738_K011739_K011740_K011741_K011742_K011743_K011744_K011768_K011769_11_lane_gembs
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SAMPLE K011728_K011737_K011738_K011739_K011740_K011741_K011742_K011743_K011744_K011768_K011769_11_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
22281653 |
697581 |
3.13 % |
| NonRefCpG |
822797 |
2461 |
0.30 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
4506392 |
13.38 % |
81443 |
4.54 % |
347058 |
31.01 % |
1187 |
10.48 % |
| Intermediate (0.3-0.7) |
10587011 |
31.44 % |
313943 |
17.50 % |
396533 |
35.43 % |
2472 |
21.82 % |
| Methylated (0.7-1) |
18579385 |
55.18 % |
1398991 |
77.97 % |
375466 |
33.55 % |
7672 |
67.70 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.740 |
|
0.870 |
|
0.520 |
|
0.830 |
|