/EXTERNAL BLUEPRINT/K010402_K010403_K010404_K010405_K010406_K010407_K010408_K010409_K010410_K010411_K010412_11_lane_gembs/EXTERNAL-K010403_1798645_2
BACK
SAMPLE K010402_K010403_K010404_K010405_K010406_K010407_K010408_K010409_K010410_K010411_K010412_11_lane_gembs LANE EXTERNAL-K010403_1798645_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 12057028 | 100.00 % | 6028514 | 100.00 % | 6028514 | 100.00 % |
| General Reads | 10083063 | 83.63 % | 5120515 | 84.94 % | 4962548 | 82.32 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 49 | 0.00 % | 25 | 0.00 % | 24 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 1973916 | 16.37 % | 907974 | 15.06 % | 1065942 | 17.68 % |
| Bisulfite_reads C2T | 5202346 | 43.15 % | 2640808 | 43.81 % | 2561538 | 42.49 % |
| Bisulfite_reads G2A | 4880766 | 40.48 % | 2479732 | 41.13 % | 2401034 | 39.83 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 3696320 |
| Average Unique | 61.31 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 321865731 | 35.13 % | 128549393 | 28.06 % | 193316338 | 42.19 % |
| Base Counts Overall C | 132441924 | 14.45 % | 26012550 | 5.68 % | 106429374 | 23.23 % |
| Base Counts Overall G | 143656438 | 15.68 % | 111699645 | 24.38 % | 31956793 | 6.97 % |
| Base Counts Overall T | 305915478 | 33.38 % | 185855426 | 40.56 % | 120060052 | 26.20 % |
| Base Counts Overall N | 12454557 | 1.36 % | 6050050 | 1.32 % | 6404507 | 1.40 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 4750868 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 6028514 |
| 75 | 6028514 |
Insert Size Plot
| Insert Size Histogram |
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