/EXTERNAL BLUEPRINT/K010402_K010403_K010404_K010405_K010406_K010407_K010408_K010409_K010410_K010411_K010412_11_lane_gembs/EXTERNAL-K010404_1798646_2
BACK
SAMPLE K010402_K010403_K010404_K010405_K010406_K010407_K010408_K010409_K010410_K010411_K010412_11_lane_gembs LANE EXTERNAL-K010404_1798646_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 18199480 | 100.00 % | 9099740 | 100.00 % | 9099740 | 100.00 % |
| General Reads | 14984855 | 82.34 % | 7599603 | 83.51 % | 7385252 | 81.16 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 20 | 0.00 % | 10 | 0.00 % | 10 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 3214605 | 17.66 % | 1500127 | 16.49 % | 1714478 | 18.84 % |
| Bisulfite_reads C2T | 7737131 | 42.51 % | 3922109 | 43.10 % | 3815022 | 41.92 % |
| Bisulfite_reads G2A | 7247744 | 39.82 % | 3677504 | 40.41 % | 3570240 | 39.23 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 5762901 |
| Average Unique | 63.33 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 465178580 | 33.63 % | 187112852 | 27.06 % | 278065728 | 40.21 % |
| Base Counts Overall C | 209275153 | 15.13 % | 48043404 | 6.95 % | 161231749 | 23.31 % |
| Base Counts Overall G | 226494256 | 16.38 % | 168168077 | 24.32 % | 58326179 | 8.43 % |
| Base Counts Overall T | 463429770 | 33.51 % | 279122257 | 40.36 % | 184307513 | 26.65 % |
| Base Counts Overall N | 18782721 | 1.36 % | 9133650 | 1.32 % | 9649071 | 1.40 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 7155538 |
Mapping Quality
| Mapping Quality Histogram |
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Read Length
| Read Length | Reads |
| 75 | 9099740 |
| 75 | 9099740 |
Insert Size Plot
| Insert Size Histogram |
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