/EXTERNAL BLUEPRINT/K010402_K010403_K010404_K010405_K010406_K010407_K010408_K010409_K010410_K010411_K010412_11_lane_gembs/EXTERNAL-K010405_1798647_2
BACK
SAMPLE K010402_K010403_K010404_K010405_K010406_K010407_K010408_K010409_K010410_K010411_K010412_11_lane_gembs LANE EXTERNAL-K010405_1798647_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 13812000 | 100.00 % | 6906000 | 100.00 % | 6906000 | 100.00 % |
| General Reads | 10904249 | 78.95 % | 5529937 | 80.07 % | 5374312 | 77.82 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 32 | 0.00 % | 16 | 0.00 % | 16 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 2907719 | 21.05 % | 1376047 | 19.93 % | 1531672 | 22.18 % |
| Bisulfite_reads C2T | 5637473 | 40.82 % | 2858002 | 41.38 % | 2779471 | 40.25 % |
| Bisulfite_reads G2A | 5266808 | 38.13 % | 2671951 | 38.69 % | 2594857 | 37.57 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 4152272 |
| Average Unique | 60.13 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 349246157 | 33.27 % | 142954778 | 27.24 % | 206291379 | 39.30 % |
| Base Counts Overall C | 163064857 | 15.53 % | 40052142 | 7.63 % | 123012715 | 23.44 % |
| Base Counts Overall G | 176885797 | 16.85 % | 128685995 | 24.52 % | 48199802 | 9.18 % |
| Base Counts Overall T | 346269565 | 32.99 % | 206231552 | 39.29 % | 140038013 | 26.68 % |
| Base Counts Overall N | 14245624 | 1.36 % | 6931533 | 1.32 % | 7314091 | 1.39 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 5180651 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 6906000 |
| 75 | 6906000 |
Insert Size Plot
| Insert Size Histogram |
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