/EXTERNAL BLUEPRINT/K010402_K010403_K010404_K010405_K010406_K010407_K010408_K010409_K010410_K010411_K010412_11_lane_gembs/EXTERNAL-K010406_1798648_2
BACK
SAMPLE K010402_K010403_K010404_K010405_K010406_K010407_K010408_K010409_K010410_K010411_K010412_11_lane_gembs LANE EXTERNAL-K010406_1798648_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 16171322 | 100.00 % | 8085661 | 100.00 % | 8085661 | 100.00 % |
| General Reads | 11978166 | 74.07 % | 6088638 | 75.30 % | 5889528 | 72.84 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 18 | 0.00 % | 10 | 0.00 % | 8 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4193138 | 25.93 % | 1997013 | 24.70 % | 2196125 | 27.16 % |
| Bisulfite_reads C2T | 6168937 | 38.15 % | 3134196 | 38.76 % | 3034741 | 37.53 % |
| Bisulfite_reads G2A | 5809247 | 35.92 % | 2954452 | 36.54 % | 2854795 | 35.31 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 4588446 |
| Average Unique | 56.75 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 385820706 | 31.39 % | 170785944 | 27.79 % | 215034762 | 34.99 % |
| Base Counts Overall C | 211477209 | 17.21 % | 73742382 | 12.00 % | 137734827 | 22.41 % |
| Base Counts Overall G | 227836426 | 18.54 % | 143229897 | 23.31 % | 84606529 | 13.77 % |
| Base Counts Overall T | 387198578 | 31.50 % | 218637078 | 35.58 % | 168561500 | 27.43 % |
| Base Counts Overall N | 16687553 | 1.36 % | 8114935 | 1.32 % | 8572618 | 1.40 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 5690024 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 8085661 |
| 75 | 8085661 |
Insert Size Plot
| Insert Size Histogram |
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