/EXTERNAL BLUEPRINT/K010402_K010403_K010404_K010405_K010406_K010407_K010408_K010409_K010410_K010411_K010412_11_lane_gembs/EXTERNAL-K010407_1798649_2
BACK
SAMPLE K010402_K010403_K010404_K010405_K010406_K010407_K010408_K010409_K010410_K010411_K010412_11_lane_gembs LANE EXTERNAL-K010407_1798649_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 17039600 | 100.00 % | 8519800 | 100.00 % | 8519800 | 100.00 % |
| General Reads | 12194617 | 71.57 % | 6188210 | 72.63 % | 6006407 | 70.50 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 27 | 0.00 % | 14 | 0.00 % | 13 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4844956 | 28.43 % | 2331576 | 27.37 % | 2513380 | 29.50 % |
| Bisulfite_reads C2T | 6299245 | 36.97 % | 3195004 | 37.50 % | 3104241 | 36.44 % |
| Bisulfite_reads G2A | 5895399 | 34.60 % | 2993220 | 35.13 % | 2902179 | 34.06 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 4670364 |
| Average Unique | 54.82 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 406077831 | 31.36 % | 174982675 | 27.02 % | 231095156 | 35.69 % |
| Base Counts Overall C | 224069951 | 17.30 % | 73534576 | 11.36 % | 150535375 | 23.25 % |
| Base Counts Overall G | 242635008 | 18.74 % | 157629280 | 24.34 % | 85005728 | 13.13 % |
| Base Counts Overall T | 404635568 | 31.25 % | 232805069 | 35.95 % | 171830499 | 26.54 % |
| Base Counts Overall N | 17591242 | 1.36 % | 8553200 | 1.32 % | 9038042 | 1.40 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 5800607 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 8519800 |
| 75 | 8519800 |
Insert Size Plot
| Insert Size Histogram |
 |