/EXTERNAL BLUEPRINT/K010402_K010403_K010404_K010405_K010406_K010407_K010408_K010409_K010410_K010411_K010412_11_lane_gembs/EXTERNAL-K010408_1798650_2
BACK
SAMPLE K010402_K010403_K010404_K010405_K010406_K010407_K010408_K010409_K010410_K010411_K010412_11_lane_gembs LANE EXTERNAL-K010408_1798650_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 18859238 | 100.00 % | 9429619 | 100.00 % | 9429619 | 100.00 % |
| General Reads | 14181833 | 75.20 % | 7187695 | 76.22 % | 6994138 | 74.17 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 68 | 0.00 % | 34 | 0.00 % | 34 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4677337 | 24.80 % | 2241890 | 23.77 % | 2435447 | 25.83 % |
| Bisulfite_reads C2T | 7321256 | 38.82 % | 3709510 | 39.34 % | 3611746 | 38.30 % |
| Bisulfite_reads G2A | 6860645 | 36.38 % | 3478219 | 36.89 % | 3382426 | 35.87 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 5435051 |
| Average Unique | 57.64 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 471037637 | 32.86 % | 194268763 | 27.11 % | 276768874 | 38.62 % |
| Base Counts Overall C | 227712720 | 15.89 % | 59542931 | 8.31 % | 168169789 | 23.47 % |
| Base Counts Overall G | 246227273 | 17.18 % | 175790678 | 24.53 % | 70436595 | 9.83 % |
| Base Counts Overall T | 468864354 | 32.71 % | 277585024 | 38.73 % | 191279330 | 26.69 % |
| Base Counts Overall N | 19460104 | 1.36 % | 9463648 | 1.32 % | 9996456 | 1.39 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 6753113 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 9429619 |
| 75 | 9429619 |
Insert Size Plot
| Insert Size Histogram |
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