/EXTERNAL BLUEPRINT/K010402_K010403_K010404_K010405_K010406_K010407_K010408_K010409_K010410_K010411_K010412_11_lane_gembs/EXTERNAL-K010409_1798651_2
BACK
SAMPLE K010402_K010403_K010404_K010405_K010406_K010407_K010408_K010409_K010410_K010411_K010412_11_lane_gembs LANE EXTERNAL-K010409_1798651_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 16533042 | 100.00 % | 8266521 | 100.00 % | 8266521 | 100.00 % |
| General Reads | 13249187 | 80.14 % | 6718021 | 81.27 % | 6531166 | 79.01 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 20 | 0.00 % | 10 | 0.00 % | 10 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 3283835 | 19.86 % | 1548490 | 18.73 % | 1735345 | 20.99 % |
| Bisulfite_reads C2T | 6844338 | 41.40 % | 3469116 | 41.97 % | 3375222 | 40.83 % |
| Bisulfite_reads G2A | 6404869 | 38.74 % | 3248915 | 39.30 % | 3155954 | 38.18 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 5069975 |
| Average Unique | 61.33 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 420161278 | 33.44 % | 171289257 | 27.26 % | 248872021 | 39.61 % |
| Base Counts Overall C | 192841202 | 15.35 % | 45122602 | 7.18 % | 147718600 | 23.51 % |
| Base Counts Overall G | 208873255 | 16.62 % | 154351320 | 24.57 % | 54521935 | 8.68 % |
| Base Counts Overall T | 417564494 | 33.23 % | 249191734 | 39.66 % | 168372760 | 26.80 % |
| Base Counts Overall N | 17070963 | 1.36 % | 8300683 | 1.32 % | 8770280 | 1.40 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 6305504 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 8266521 |
| 75 | 8266521 |
Insert Size Plot
| Insert Size Histogram |
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