/EXTERNAL BLUEPRINT/K010402_K010403_K010404_K010405_K010406_K010407_K010408_K010409_K010410_K010411_K010412_11_lane_gembs/EXTERNAL-K010410_1798652_2
BACK
SAMPLE K010402_K010403_K010404_K010405_K010406_K010407_K010408_K010409_K010410_K010411_K010412_11_lane_gembs LANE EXTERNAL-K010410_1798652_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 17490574 | 100.00 % | 8745287 | 100.00 % | 8745287 | 100.00 % |
| General Reads | 12380960 | 70.79 % | 6292110 | 71.95 % | 6088850 | 69.62 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 57 | 0.00 % | 30 | 0.00 % | 27 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 5109557 | 29.21 % | 2453147 | 28.05 % | 2656410 | 30.38 % |
| Bisulfite_reads C2T | 6395532 | 36.57 % | 3249041 | 37.15 % | 3146491 | 35.98 % |
| Bisulfite_reads G2A | 5985485 | 34.22 % | 3043099 | 34.80 % | 2942386 | 33.65 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 4728383 |
| Average Unique | 54.07 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 418519540 | 31.48 % | 179392230 | 26.99 % | 239127310 | 35.98 % |
| Base Counts Overall C | 228361166 | 17.18 % | 74315830 | 11.18 % | 154045336 | 23.18 % |
| Base Counts Overall G | 246426854 | 18.54 % | 160784111 | 24.19 % | 85642743 | 12.89 % |
| Base Counts Overall T | 417921056 | 31.44 % | 241370976 | 36.32 % | 176550080 | 26.56 % |
| Base Counts Overall N | 18055008 | 1.36 % | 8778665 | 1.32 % | 9276343 | 1.40 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 5871447 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 8745287 |
| 75 | 8745287 |
Insert Size Plot
| Insert Size Histogram |
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