/EXTERNAL BLUEPRINT/K010402_K010403_K010404_K010405_K010406_K010407_K010408_K010409_K010410_K010411_K010412_11_lane_gembs/EXTERNAL-K010411_1798653_2
BACK
SAMPLE K010402_K010403_K010404_K010405_K010406_K010407_K010408_K010409_K010410_K010411_K010412_11_lane_gembs LANE EXTERNAL-K010411_1798653_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 38699832 | 100.00 % | 19349916 | 100.00 % | 19349916 | 100.00 % |
| General Reads | 35226048 | 91.02 % | 17844243 | 92.22 % | 17381805 | 89.83 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 45 | 0.00 % | 22 | 0.00 % | 23 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 3473739 | 8.98 % | 1505651 | 7.78 % | 1968088 | 10.17 % |
| Bisulfite_reads C2T | 18199350 | 47.03 % | 9215966 | 47.63 % | 8983384 | 46.43 % |
| Bisulfite_reads G2A | 17026743 | 44.00 % | 8628299 | 44.59 % | 8398444 | 43.40 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 13404493 |
| Average Unique | 69.27 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 1040102435 | 35.36 % | 405024188 | 27.54 % | 635078247 | 43.19 % |
| Base Counts Overall C | 401863170 | 13.66 % | 53698124 | 3.65 % | 348165046 | 23.68 % |
| Base Counts Overall G | 431685340 | 14.68 % | 361462086 | 24.58 % | 70223254 | 4.78 % |
| Base Counts Overall T | 1027587270 | 34.94 % | 630986257 | 42.91 % | 396601013 | 26.97 % |
| Base Counts Overall N | 39949017 | 1.36 % | 19422961 | 1.32 % | 20526056 | 1.40 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 16697337 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 19349916 |
| 75 | 19349916 |
Insert Size Plot
| Insert Size Histogram |
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