/EXTERNAL BLUEPRINT/mapping_coverage/K010402_K010403_K010404_K010405_K010406_K010407_K010408_K010409_K010410_K010411_K010412_11_lane_gembs
BACK
SAMPLE K010402_K010403_K010404_K010405_K010406_K010407_K010408_K010409_K010410_K010411_K010412_11_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
222767956 |
100% |
15669191864 |
100% |
| Mapped |
217248762 |
97.52 % |
15255252314 |
97.36 % |
| Passed |
108399530 |
48.66 % |
7091559914 |
45.26 % |
| NotPassed |
108849232 |
48.86 % |
8163692400 |
52.10 % |
| |
|
|
|
|
| LowMAPQ |
52221882 |
23.44 % |
3916641150 |
25.00 % |
| MateUnmapped |
5519194 |
2.48 % |
413939550 |
2.64 % |
| Duplicate |
53147543 |
23.86 % |
3986065725 |
25.44 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
79140 |
0.04 % |
5935500 |
0.04 % |
| |
|
|
|
|
| NotCorrectlyAligned |
3400667 |
1.53 % |
255050025 |
1.63 % |
| Unmapped |
5519194 |
2.48 % |
413939550 |
2.64 % |
Base Level Counts
| Bases |
# |
% |
| Total |
7643023200 |
100% |
| Passed |
6189883190 |
80.99 % |
| Trimmed |
460627854 |
6.03 % |
| Clipped |
26406018 |
0.35 % |
| Overlapping |
525057268 |
6.87 % |
| LowQuality |
441048870 |
5.77 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |