/EXTERNAL BLUEPRINT/methylation/K010402_K010403_K010404_K010405_K010406_K010407_K010408_K010409_K010410_K010411_K010412_11_lane_gembs
BACK
SAMPLE K010402_K010403_K010404_K010405_K010406_K010407_K010408_K010409_K010410_K010411_K010412_11_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
21878731 |
609740 |
2.79 % |
| NonRefCpG |
853184 |
2237 |
0.26 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
4549279 |
13.96 % |
79212 |
4.96 % |
350787 |
30.81 % |
1088 |
10.74 % |
| Intermediate (0.3-0.7) |
10300606 |
31.62 % |
279801 |
17.53 % |
404847 |
35.56 % |
2197 |
21.69 % |
| Methylated (0.7-1) |
17726766 |
54.42 % |
1237386 |
77.51 % |
382837 |
33.63 % |
6847 |
67.57 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.730 |
|
0.870 |
|
0.520 |
|
0.830 |
|