/EXTERNAL BLUEPRINT/mapping_coverage/K011800_K011850_33libs_33_lane_gembs
BACK
SAMPLE K011800_K011850_33libs_33_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
469236083 |
100% |
33995119990 |
100% |
| Mapped |
462652285 |
98.60 % |
33494751342 |
98.53 % |
| Passed |
184690362 |
39.36 % |
12369645194 |
36.39 % |
| NotPassed |
277961923 |
59.24 % |
21125106148 |
62.14 % |
| |
|
|
|
|
| LowMAPQ |
123500044 |
26.32 % |
9386003344 |
27.61 % |
| MateUnmapped |
6583798 |
1.40 % |
500368648 |
1.47 % |
| Duplicate |
149963633 |
31.96 % |
11397236108 |
33.53 % |
| BadOrientation |
48 |
0.00 % |
3648 |
0.00 % |
| LargeInsertSize |
26264 |
0.01 % |
1996064 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
4471934 |
0.95 % |
339866984 |
1.00 % |
| Unmapped |
6583798 |
1.40 % |
500368648 |
1.47 % |
Base Level Counts
| Bases |
# |
% |
| Total |
13694770448 |
100% |
| Passed |
11356876943 |
82.93 % |
| Trimmed |
805440771 |
5.88 % |
| Clipped |
36972034 |
0.27 % |
| Overlapping |
1288153220 |
9.41 % |
| LowQuality |
207327480 |
1.51 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |