/EXTERNAL BLUEPRINT/methylation/K011800_K011850_33libs_33_lane_gembs
BACK
SAMPLE K011800_K011850_33libs_33_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
23886997 |
2956099 |
12.38 % |
| NonRefCpG |
586901 |
9187 |
1.57 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
3912379 |
9.85 % |
187158 |
2.70 % |
228990 |
26.53 % |
2280 |
6.25 % |
| Intermediate (0.3-0.7) |
11444500 |
28.82 % |
1142689 |
16.51 % |
294258 |
34.09 % |
7592 |
20.80 % |
| Methylated (0.7-1) |
24358933 |
61.33 % |
5592765 |
80.79 % |
339891 |
39.38 % |
26638 |
72.96 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.780 |
|
0.880 |
|
0.590 |
|
0.850 |
|