/EXTERNAL BLUEPRINT/K011802_K011819_K011820_K011821_K011822_K011823_K011824_K011825_K011826_K011853_K011854_11_lane_gembs/EXTERNAL-K011819_1894761_2
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SAMPLE K011802_K011819_K011820_K011821_K011822_K011823_K011824_K011825_K011826_K011853_K011854_11_lane_gembs LANE EXTERNAL-K011819_1894761_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 14972076 | 100.00 % | 7486038 | 100.00 % | 7486038 | 100.00 % |
| General Reads | 11899959 | 79.48 % | 5979386 | 79.87 % | 5920573 | 79.09 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 3072117 | 20.52 % | 1506652 | 20.13 % | 1565465 | 20.91 % |
| Bisulfite_reads C2T | 6143413 | 41.03 % | 3086008 | 41.22 % | 3057405 | 40.84 % |
| Bisulfite_reads G2A | 5756546 | 38.45 % | 2893378 | 38.65 % | 2863168 | 38.25 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 4589313 |
| Average Unique | 61.30 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 385141251 | 33.41 % | 153002485 | 26.54 % | 232138766 | 40.27 % |
| Base Counts Overall C | 181404722 | 15.74 % | 42886729 | 7.44 % | 138517993 | 24.03 % |
| Base Counts Overall G | 186971202 | 16.22 % | 140621591 | 24.40 % | 46349611 | 8.04 % |
| Base Counts Overall T | 384188159 | 33.33 % | 232335970 | 40.31 % | 151852189 | 26.34 % |
| Base Counts Overall N | 15144518 | 1.31 % | 7578151 | 1.31 % | 7566367 | 1.31 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 5664446 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 7486038 |
| 76 | 7486038 |
Insert Size Plot
| Insert Size Histogram |
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