/EXTERNAL BLUEPRINT/K011802_K011819_K011820_K011821_K011822_K011823_K011824_K011825_K011826_K011853_K011854_11_lane_gembs/EXTERNAL-K011820_1894762_2
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SAMPLE K011802_K011819_K011820_K011821_K011822_K011823_K011824_K011825_K011826_K011853_K011854_11_lane_gembs LANE EXTERNAL-K011820_1894762_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 12710788 | 100.00 % | 6355394 | 100.00 % | 6355394 | 100.00 % |
| General Reads | 8299492 | 65.29 % | 4179525 | 65.76 % | 4119967 | 64.83 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 1 | 0.00 % | 0 | 0.00 % | 1 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4411295 | 34.71 % | 2175869 | 34.24 % | 2235426 | 35.17 % |
| Bisulfite_reads C2T | 4291459 | 33.76 % | 2160301 | 33.99 % | 2131158 | 33.53 % |
| Bisulfite_reads G2A | 4008034 | 31.53 % | 2019224 | 31.77 % | 1988810 | 31.29 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 3172004 |
| Average Unique | 49.91 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 305020881 | 31.16 % | 135155766 | 27.62 % | 169865115 | 34.71 % |
| Base Counts Overall C | 174987498 | 17.88 % | 63512745 | 12.98 % | 111474753 | 22.78 % |
| Base Counts Overall G | 180857500 | 18.48 % | 113597615 | 23.21 % | 67259885 | 13.74 % |
| Base Counts Overall T | 305007741 | 31.16 % | 170666412 | 34.88 % | 134341329 | 27.45 % |
| Base Counts Overall N | 12857056 | 1.31 % | 6432800 | 1.31 % | 6424256 | 1.31 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 3922668 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 6355394 |
| 76 | 6355394 |
Insert Size Plot
| Insert Size Histogram |
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