/EXTERNAL BLUEPRINT/K011802_K011819_K011820_K011821_K011822_K011823_K011824_K011825_K011826_K011853_K011854_11_lane_gembs/EXTERNAL-K011822_1894764_2
BACK
SAMPLE K011802_K011819_K011820_K011821_K011822_K011823_K011824_K011825_K011826_K011853_K011854_11_lane_gembs LANE EXTERNAL-K011822_1894764_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 14336918 | 100.00 % | 7168459 | 100.00 % | 7168459 | 100.00 % |
| General Reads | 11240223 | 78.40 % | 5650530 | 78.82 % | 5589693 | 77.98 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 5 | 0.00 % | 5 | 0.00 % | 0 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 3096690 | 21.60 % | 1517924 | 21.18 % | 1578766 | 22.02 % |
| Bisulfite_reads C2T | 5820122 | 40.60 % | 2925053 | 40.80 % | 2895069 | 40.39 % |
| Bisulfite_reads G2A | 5420106 | 37.81 % | 2725482 | 38.02 % | 2694624 | 37.59 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 4331250 |
| Average Unique | 60.42 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 367342577 | 33.28 % | 147863668 | 26.79 % | 219478909 | 39.76 % |
| Base Counts Overall C | 175345341 | 15.88 % | 43614496 | 7.90 % | 131730845 | 23.87 % |
| Base Counts Overall G | 181829907 | 16.47 % | 134565617 | 24.38 % | 47264290 | 8.56 % |
| Base Counts Overall T | 364926653 | 33.06 % | 218672657 | 39.62 % | 146253996 | 26.50 % |
| Base Counts Overall N | 14498208 | 1.31 % | 7254905 | 1.31 % | 7243303 | 1.31 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 5360175 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 7168459 |
| 76 | 7168459 |
Insert Size Plot
| Insert Size Histogram |
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