/EXTERNAL BLUEPRINT/K011802_K011819_K011820_K011821_K011822_K011823_K011824_K011825_K011826_K011853_K011854_11_lane_gembs/EXTERNAL-K011823_1894765_2
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SAMPLE K011802_K011819_K011820_K011821_K011822_K011823_K011824_K011825_K011826_K011853_K011854_11_lane_gembs LANE EXTERNAL-K011823_1894765_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 21492996 | 100.00 % | 10746498 | 100.00 % | 10746498 | 100.00 % |
| General Reads | 17308539 | 80.53 % | 8698789 | 80.95 % | 8609750 | 80.12 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 6 | 0.00 % | 3 | 0.00 % | 3 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4184451 | 19.47 % | 2047706 | 19.05 % | 2136745 | 19.88 % |
| Bisulfite_reads C2T | 8955760 | 41.67 % | 4499577 | 41.87 % | 4456183 | 41.47 % |
| Bisulfite_reads G2A | 8352785 | 38.86 % | 4199215 | 39.08 % | 4153570 | 38.65 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 6677856 |
| Average Unique | 62.14 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 555941858 | 33.59 % | 216372771 | 26.15 % | 339569087 | 41.04 % |
| Base Counts Overall C | 258385882 | 15.61 % | 55715499 | 6.73 % | 202670383 | 24.49 % |
| Base Counts Overall G | 267904175 | 16.19 % | 206557032 | 24.96 % | 61347143 | 7.41 % |
| Base Counts Overall T | 550989411 | 33.29 % | 337957336 | 40.84 % | 213032075 | 25.74 % |
| Base Counts Overall N | 21739366 | 1.31 % | 10877708 | 1.31 % | 10861658 | 1.31 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 8238275 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 10746498 |
| 76 | 10746498 |
Insert Size Plot
| Insert Size Histogram |
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