/EXTERNAL BLUEPRINT/K011802_K011819_K011820_K011821_K011822_K011823_K011824_K011825_K011826_K011853_K011854_11_lane_gembs/EXTERNAL-K011824_1894766_2
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SAMPLE K011802_K011819_K011820_K011821_K011822_K011823_K011824_K011825_K011826_K011853_K011854_11_lane_gembs LANE EXTERNAL-K011824_1894766_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 17138198 | 100.00 % | 8569099 | 100.00 % | 8569099 | 100.00 % |
| General Reads | 12187645 | 71.11 % | 6122545 | 71.45 % | 6065100 | 70.78 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 7 | 0.00 % | 4 | 0.00 % | 3 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4950546 | 28.89 % | 2446550 | 28.55 % | 2503996 | 29.22 % |
| Bisulfite_reads C2T | 6322219 | 36.89 % | 3175436 | 37.06 % | 3146783 | 36.72 % |
| Bisulfite_reads G2A | 5865433 | 34.22 % | 2947113 | 34.39 % | 2918320 | 34.06 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 4634470 |
| Average Unique | 54.08 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 422190664 | 31.99 % | 174517251 | 26.45 % | 247673413 | 37.54 % |
| Base Counts Overall C | 226288911 | 17.15 % | 70349725 | 10.66 % | 155939186 | 23.63 % |
| Base Counts Overall G | 234788090 | 17.79 % | 159238442 | 24.13 % | 75549648 | 11.45 % |
| Base Counts Overall T | 419042960 | 31.75 % | 247042864 | 37.44 % | 172000096 | 26.07 % |
| Base Counts Overall N | 17330621 | 1.31 % | 8672341 | 1.31 % | 8658280 | 1.31 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 5742090 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 8569099 |
| 76 | 8569099 |
Insert Size Plot
| Insert Size Histogram |
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