/EXTERNAL BLUEPRINT/K011802_K011819_K011820_K011821_K011822_K011823_K011824_K011825_K011826_K011853_K011854_11_lane_gembs/EXTERNAL-K011825_1894767_2
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SAMPLE K011802_K011819_K011820_K011821_K011822_K011823_K011824_K011825_K011826_K011853_K011854_11_lane_gembs LANE EXTERNAL-K011825_1894767_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 20196156 | 100.00 % | 10098078 | 100.00 % | 10098078 | 100.00 % |
| General Reads | 15841865 | 78.44 % | 7959563 | 78.82 % | 7882302 | 78.06 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4354291 | 21.56 % | 2138515 | 21.18 % | 2215776 | 21.94 % |
| Bisulfite_reads C2T | 8192630 | 40.57 % | 4114666 | 40.75 % | 4077964 | 40.38 % |
| Bisulfite_reads G2A | 7649235 | 37.87 % | 3844897 | 38.08 % | 3804338 | 37.67 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 6157641 |
| Average Unique | 60.98 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 522629915 | 33.61 % | 205595994 | 26.44 % | 317033921 | 40.77 % |
| Base Counts Overall C | 242536377 | 15.60 % | 52876433 | 6.80 % | 189659944 | 24.39 % |
| Base Counts Overall G | 250699602 | 16.12 % | 193192600 | 24.85 % | 57507002 | 7.40 % |
| Base Counts Overall T | 518815106 | 33.36 % | 315666962 | 40.60 % | 203148144 | 26.13 % |
| Base Counts Overall N | 20423012 | 1.31 % | 10220017 | 1.31 % | 10202995 | 1.31 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 7574360 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 10098078 |
| 76 | 10098078 |
Insert Size Plot
| Insert Size Histogram |
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