/EXTERNAL BLUEPRINT/K011802_K011819_K011820_K011821_K011822_K011823_K011824_K011825_K011826_K011853_K011854_11_lane_gembs/EXTERNAL-K011826_1894768_2
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SAMPLE K011802_K011819_K011820_K011821_K011822_K011823_K011824_K011825_K011826_K011853_K011854_11_lane_gembs LANE EXTERNAL-K011826_1894768_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 15227200 | 100.00 % | 7613600 | 100.00 % | 7613600 | 100.00 % |
| General Reads | 12312808 | 80.86 % | 6188188 | 81.28 % | 6124620 | 80.44 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 3 | 0.00 % | 3 | 0.00 % | 0 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 2914389 | 19.14 % | 1425409 | 18.72 % | 1488980 | 19.56 % |
| Bisulfite_reads C2T | 6360387 | 41.77 % | 3195791 | 41.97 % | 3164596 | 41.57 % |
| Bisulfite_reads G2A | 5952424 | 39.09 % | 2992400 | 39.30 % | 2960024 | 38.88 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 4731555 |
| Average Unique | 62.15 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 392072822 | 33.44 % | 156622526 | 26.72 % | 235450296 | 40.16 % |
| Base Counts Overall C | 184515601 | 15.74 % | 42654591 | 7.28 % | 141861010 | 24.20 % |
| Base Counts Overall G | 191930696 | 16.37 % | 145226725 | 24.77 % | 46703971 | 7.97 % |
| Base Counts Overall T | 388578195 | 33.14 % | 234038152 | 39.92 % | 154540043 | 26.36 % |
| Base Counts Overall N | 15397086 | 1.31 % | 7705206 | 1.31 % | 7691880 | 1.31 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 5841055 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 7613600 |
| 76 | 7613600 |
Insert Size Plot
| Insert Size Histogram |
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