/EXTERNAL BLUEPRINT/K011802_K011819_K011820_K011821_K011822_K011823_K011824_K011825_K011826_K011853_K011854_11_lane_gembs/EXTERNAL-K011853_1894795_2
BACK
SAMPLE K011802_K011819_K011820_K011821_K011822_K011823_K011824_K011825_K011826_K011853_K011854_11_lane_gembs LANE EXTERNAL-K011853_1894795_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 49192974 | 100.00 % | 24596487 | 100.00 % | 24596487 | 100.00 % |
| General Reads | 44745558 | 90.96 % | 22484823 | 91.41 % | 22260735 | 90.50 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4447416 | 9.04 % | 2111664 | 8.59 % | 2335752 | 9.50 % |
| Bisulfite_reads C2T | 23105999 | 46.97 % | 11607621 | 47.19 % | 11498378 | 46.75 % |
| Bisulfite_reads G2A | 21639559 | 43.99 % | 10877202 | 44.22 % | 10762357 | 43.76 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 17146716 |
| Average Unique | 69.71 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 1323566109 | 34.94 % | 513501609 | 27.11 % | 810064500 | 42.77 % |
| Base Counts Overall C | 545090393 | 14.39 % | 80046011 | 4.23 % | 465044382 | 24.55 % |
| Base Counts Overall G | 562070825 | 14.84 % | 472429290 | 24.94 % | 89641535 | 4.73 % |
| Base Counts Overall T | 1307365804 | 34.51 % | 803051911 | 42.40 % | 504313893 | 26.63 % |
| Base Counts Overall N | 49765867 | 1.31 % | 24900678 | 1.31 % | 24865189 | 1.31 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 21139080 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 24596487 |
| 76 | 24596487 |
Insert Size Plot
| Insert Size Histogram |
 |