/EXTERNAL BLUEPRINT/K011802_K011819_K011820_K011821_K011822_K011823_K011824_K011825_K011826_K011853_K011854_11_lane_gembs/EXTERNAL-K011854_1894796_2
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SAMPLE K011802_K011819_K011820_K011821_K011822_K011823_K011824_K011825_K011826_K011853_K011854_11_lane_gembs LANE EXTERNAL-K011854_1894796_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 46064996 | 100.00 % | 23032498 | 100.00 % | 23032498 | 100.00 % |
| General Reads | 41760725 | 90.66 % | 20975406 | 91.07 % | 20785319 | 90.24 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 20 | 0.00 % | 10 | 0.00 % | 10 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4304251 | 9.34 % | 2057082 | 8.93 % | 2247169 | 9.76 % |
| Bisulfite_reads C2T | 21594522 | 46.88 % | 10843880 | 47.08 % | 10750642 | 46.68 % |
| Bisulfite_reads G2A | 20166223 | 43.78 % | 10131536 | 43.99 % | 10034687 | 43.57 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 15930490 |
| Average Unique | 69.17 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 1237606393 | 34.89 % | 481088991 | 27.13 % | 756517402 | 42.66 % |
| Base Counts Overall C | 510204929 | 14.38 % | 86018612 | 4.85 % | 424186317 | 23.92 % |
| Base Counts Overall G | 527001859 | 14.86 % | 432090585 | 24.36 % | 94911274 | 5.35 % |
| Base Counts Overall T | 1225615183 | 34.55 % | 750995037 | 42.35 % | 474620146 | 26.76 % |
| Base Counts Overall N | 46576328 | 1.31 % | 23309121 | 1.31 % | 23267207 | 1.31 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 19681653 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 23032498 |
| 76 | 23032498 |
Insert Size Plot
| Insert Size Histogram |
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