/EXTERNAL BLUEPRINT/K011802_K011819_K011820_K011821_K011822_K011823_K011824_K011825_K011826_K011853_K011854_11_lane_gembs

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SAMPLE K011802_K011819_K011820_K011821_K011822_K011823_K011824_K011825_K011826_K011853_K011854_11_lane_gembs

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	360665746	100.00 %	180332873	100.00 %	180332873	100.00 %
General Reads	314503034	87.20 %	157996615	87.61 %	156506419	86.79 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	64	0.00 %	36	0.00 %	28	0.00 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	46162648	12.80 %	22336222	12.39 %	23826426	13.21 %
Bisulfite_reads C2T	162656433	45.10 %	81691343	45.30 %	80965090	44.90 %
Bisulfite_reads G2A	151846665	42.10 %	76305308	42.31 %	75541357	41.89 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	120254198
Average Unique	66.68 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	9610709026	34.61 %	3762102742	27.09 %	5848606284	42.12 %
Base Counts Overall C	4085623799	14.71 %	744262258	5.36 %	3341361541	24.06 %
Base Counts Overall G	4222195428	15.20 %	3400397944	24.49 %	821797484	5.92 %
Base Counts Overall T	9487981641	34.16 %	5796344475	41.74 %	3691637166	26.59 %
Base Counts Overall N	364752548	1.31 %	182523802	1.31 %	182228746	1.31 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	NA
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	148354811

Mapping Quality

Mapping Quality Histogram

Insert Size Plot

Insert Size Histogram

Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K011826_1894768_2
EXTERNAL-K011820_1894762_2
EXTERNAL-K011853_1894795_2
EXTERNAL-K011821_1894763_2
EXTERNAL-K011822_1894764_2
EXTERNAL-K011819_1894761_2
EXTERNAL-K011823_1894765_2
EXTERNAL-K011824_1894766_2
EXTERNAL-K011825_1894767_2
EXTERNAL-K011854_1894796_2
EXTERNAL-K011802_1894744_2