/EXTERNAL BLUEPRINT/mapping_coverage/K011802_K011819_K011820_K011821_K011822_K011823_K011824_K011825_K011826_K011853_K011854_11_lane_gembs
BACK
SAMPLE K011802_K011819_K011820_K011821_K011822_K011823_K011824_K011825_K011826_K011853_K011854_11_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
248865560 |
100% |
17773868447 |
100% |
| Mapped |
245794492 |
98.77 % |
17540467279 |
98.69 % |
| Passed |
114480498 |
46.00 % |
7560603735 |
42.54 % |
| NotPassed |
131313994 |
52.77 % |
9979863544 |
56.15 % |
| |
|
|
|
|
| LowMAPQ |
63052010 |
25.34 % |
4791952760 |
26.96 % |
| MateUnmapped |
3071068 |
1.23 % |
233401168 |
1.31 % |
| Duplicate |
65767168 |
26.43 % |
4998304768 |
28.12 % |
| BadOrientation |
12 |
0.00 % |
912 |
0.00 % |
| LargeInsertSize |
12836 |
0.01 % |
975536 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
2481968 |
1.00 % |
188629568 |
1.06 % |
| Unmapped |
3071068 |
1.23 % |
233401168 |
1.31 % |
Base Level Counts
| Bases |
# |
% |
| Total |
8342058680 |
100% |
| Passed |
6922670442 |
82.99 % |
| Trimmed |
494372635 |
5.93 % |
| Clipped |
25175440 |
0.30 % |
| Overlapping |
756279505 |
9.07 % |
| LowQuality |
143560658 |
1.72 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |