/EXTERNAL BLUEPRINT/methylation/K011802_K011819_K011820_K011821_K011822_K011823_K011824_K011825_K011826_K011853_K011854_11_lane_gembs
BACK
SAMPLE K011802_K011819_K011820_K011821_K011822_K011823_K011824_K011825_K011826_K011853_K011854_11_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
22471298 |
879980 |
3.92 % |
| NonRefCpG |
812648 |
3218 |
0.40 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
4828680 |
14.09 % |
115792 |
5.25 % |
345039 |
31.15 % |
1513 |
10.82 % |
| Intermediate (0.3-0.7) |
10701237 |
31.22 % |
392764 |
17.80 % |
390085 |
35.22 % |
3057 |
21.85 % |
| Methylated (0.7-1) |
18746641 |
54.69 % |
1697544 |
76.95 % |
372557 |
33.63 % |
9422 |
67.33 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.730 |
|
0.860 |
|
0.520 |
|
0.830 |
|