/EXTERNAL BLUEPRINT/K011930_K011935_K011936_K011937_4_lane_gembs

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SAMPLE K011930_K011935_K011936_K011937_4_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 138668790 100.00 % 69334395 100.00 % 69334395 100.00 %
General Reads 118815537 85.68 % 59769833 86.21 % 59045704 85.16 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 16 0.00 % 8 0.00 % 8 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 19853237 14.32 % 9564554 13.79 % 10288683 14.84 %
Bisulfite_reads C2T 61414499 44.29 % 30888692 44.55 % 30525807 44.03 %
Bisulfite_reads G2A 57401054 41.39 % 28881149 41.65 % 28519905 41.13 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 45470151
Average Unique 65.58 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 3687767114 34.54 % 1464400261 27.43 % 2223366853 41.65 %
Base Counts Overall C 1584439748 14.84 % 312572872 5.85 % 1271866876 23.82 %
Base Counts Overall G 1624913788 15.22 % 1289617085 24.16 % 335296703 6.28 %
Base Counts Overall T 3640200389 34.09 % 2201976291 41.25 % 1438224098 26.94 %
Base Counts Overall N 140175791 1.31 % 70181906 1.31 % 69993885 1.31 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 56237704



Mapping Quality

Mapping Quality Histogram
K011930_K011935_K011936_K011937_4_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K011930_K011935_K011936_K011937_4_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K011937_1894879_2
EXTERNAL-K011935_1894877_2
EXTERNAL-K011930_1894872_2
EXTERNAL-K011936_1894878_2