/EXTERNAL BLUEPRINT/mapping_coverage/K011930_K011935_K011936_K011937_4_lane_gembs
BACK
SAMPLE K011930_K011935_K011936_K011937_4_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
92120294 |
100% |
6535414208 |
100% |
| Mapped |
90702731 |
98.46 % |
6427679420 |
98.35 % |
| Passed |
39552792 |
42.94 % |
2540284056 |
38.87 % |
| NotPassed |
51149939 |
55.53 % |
3887395364 |
59.48 % |
| |
|
|
|
|
| LowMAPQ |
23335182 |
25.33 % |
1773473832 |
27.14 % |
| MateUnmapped |
1417563 |
1.54 % |
107734788 |
1.65 % |
| Duplicate |
26726935 |
29.01 % |
2031247060 |
31.08 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
6198 |
0.01 % |
471048 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
1081624 |
1.17 % |
82203424 |
1.26 % |
| Unmapped |
1417563 |
1.54 % |
107734788 |
1.65 % |
Base Level Counts
| Bases |
# |
% |
| Total |
2779424272 |
100% |
| Passed |
2323830148 |
83.61 % |
| Trimmed |
165650776 |
5.96 % |
| Clipped |
9324042 |
0.34 % |
| Overlapping |
229816174 |
8.27 % |
| LowQuality |
50803132 |
1.83 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |