/EXTERNAL BLUEPRINT/K011929_K011931_K011932_K011933_K011934_5_lane_gembs

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SAMPLE K011929_K011931_K011932_K011933_K011934_5_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 128461920 100.00 % 64230960 100.00 % 64230960 100.00 %
General Reads 104110696 81.04 % 52414351 81.60 % 51696345 80.49 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 52 0.00 % 26 0.00 % 26 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 24351172 18.96 % 11816583 18.40 % 12534589 19.51 %
Bisulfite_reads C2T 53829124 41.90 % 27092324 42.18 % 26736800 41.63 %
Bisulfite_reads G2A 50281624 39.14 % 25322053 39.42 % 24959571 38.86 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 39295017
Average Unique 61.18 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 3376873714 34.14 % 1335630059 27.01 % 2041243655 41.27 %
Base Counts Overall C 1500123088 15.17 % 311621280 6.30 % 1188501808 24.03 %
Base Counts Overall G 1533166863 15.50 % 1199817907 24.26 % 333348956 6.74 %
Base Counts Overall T 3351177945 33.88 % 2034020687 41.13 % 1317157258 26.63 %
Base Counts Overall N 130226230 1.32 % 64693987 1.31 % 65532243 1.33 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 48653599



Mapping Quality

Mapping Quality Histogram
K011929_K011931_K011932_K011933_K011934_5_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K011929_K011931_K011932_K011933_K011934_5_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K011929_1894871_2
EXTERNAL-K011934_1894876_2
EXTERNAL-K011933_1894875_2
EXTERNAL-K011931_1894873_2
EXTERNAL-K011932_1894874_2