/EXTERNAL BLUEPRINT/K011857_K011872_K011873_K011874_K011875_K011876_K011877_K011878_K011879_K011921_K011922_11_lane_gembs/EXTERNAL-K011872_1894814_2
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SAMPLE K011857_K011872_K011873_K011874_K011875_K011876_K011877_K011878_K011879_K011921_K011922_11_lane_gembs LANE EXTERNAL-K011872_1894814_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 14911632 | 100.00 % | 7455816 | 100.00 % | 7455816 | 100.00 % |
| General Reads | 9401711 | 63.05 % | 4773684 | 64.03 % | 4628027 | 62.07 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 4 | 0.00 % | 2 | 0.00 % | 2 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 5509917 | 36.95 % | 2682130 | 35.97 % | 2827787 | 37.93 % |
| Bisulfite_reads C2T | 4836079 | 32.43 % | 2454581 | 32.92 % | 2381498 | 31.94 % |
| Bisulfite_reads G2A | 4565636 | 30.62 % | 2319105 | 31.10 % | 2246531 | 30.13 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 3618783 |
| Average Unique | 48.54 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 337908322 | 29.43 % | 156826820 | 27.32 % | 181081502 | 31.54 % |
| Base Counts Overall C | 225054885 | 19.60 % | 94432983 | 16.45 % | 130621902 | 22.75 % |
| Base Counts Overall G | 232999797 | 20.29 % | 133986749 | 23.34 % | 99013048 | 17.25 % |
| Base Counts Overall T | 337223824 | 29.37 % | 181340654 | 31.59 % | 155883170 | 27.15 % |
| Base Counts Overall N | 15008836 | 1.31 % | 7510626 | 1.31 % | 7498210 | 1.31 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 4468201 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 7455816 |
| 76 | 7455816 |
Insert Size Plot
| Insert Size Histogram |
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