/EXTERNAL BLUEPRINT/K011857_K011872_K011873_K011874_K011875_K011876_K011877_K011878_K011879_K011921_K011922_11_lane_gembs/EXTERNAL-K011873_1894815_2
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SAMPLE K011857_K011872_K011873_K011874_K011875_K011876_K011877_K011878_K011879_K011921_K011922_11_lane_gembs LANE EXTERNAL-K011873_1894815_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 16919150 | 100.00 % | 8459575 | 100.00 % | 8459575 | 100.00 % |
| General Reads | 10255043 | 60.61 % | 5200203 | 61.47 % | 5054840 | 59.75 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 1 | 0.00 % | 1 | 0.00 % | 0 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 6664106 | 39.39 % | 3259371 | 38.53 % | 3404735 | 40.25 % |
| Bisulfite_reads C2T | 5272767 | 31.16 % | 2672810 | 31.60 % | 2599957 | 30.73 % |
| Bisulfite_reads G2A | 4982277 | 29.45 % | 2527394 | 29.88 % | 2454883 | 29.02 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 3973739 |
| Average Unique | 46.97 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 371407174 | 28.51 % | 175715720 | 26.98 % | 195691454 | 30.04 % |
| Base Counts Overall C | 265092196 | 20.35 % | 117696648 | 18.07 % | 147395548 | 22.63 % |
| Base Counts Overall G | 275175014 | 21.12 % | 151308746 | 23.23 % | 123866268 | 19.02 % |
| Base Counts Overall T | 374068762 | 28.71 % | 198142167 | 30.42 % | 175926595 | 27.01 % |
| Base Counts Overall N | 17031404 | 1.31 % | 8523994 | 1.31 % | 8507410 | 1.31 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 4891195 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 8459575 |
| 76 | 8459575 |
Insert Size Plot
| Insert Size Histogram |
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