/EXTERNAL BLUEPRINT/K011857_K011872_K011873_K011874_K011875_K011876_K011877_K011878_K011879_K011921_K011922_11_lane_gembs/EXTERNAL-K011874_1894816_2
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SAMPLE K011857_K011872_K011873_K011874_K011875_K011876_K011877_K011878_K011879_K011921_K011922_11_lane_gembs LANE EXTERNAL-K011874_1894816_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 15185554 | 100.00 % | 7592777 | 100.00 % | 7592777 | 100.00 % |
| General Reads | 9489055 | 62.49 % | 4809261 | 63.34 % | 4679794 | 61.63 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 2 | 0.00 % | 1 | 0.00 % | 1 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 5696497 | 37.51 % | 2783515 | 36.66 % | 2912982 | 38.37 % |
| Bisulfite_reads C2T | 4877176 | 32.12 % | 2471168 | 32.55 % | 2406008 | 31.69 % |
| Bisulfite_reads G2A | 4611881 | 30.37 % | 2338094 | 30.79 % | 2273787 | 29.95 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 3678820 |
| Average Unique | 48.45 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 325658544 | 27.85 % | 159127919 | 27.22 % | 166530625 | 28.48 % |
| Base Counts Overall C | 245375969 | 20.99 % | 116595428 | 19.94 % | 128780541 | 22.03 % |
| Base Counts Overall G | 253912959 | 21.72 % | 131847775 | 22.55 % | 122065184 | 20.88 % |
| Base Counts Overall T | 329053110 | 28.14 % | 169421358 | 28.98 % | 159631752 | 27.30 % |
| Base Counts Overall N | 15287076 | 1.31 % | 7651349 | 1.31 % | 7635727 | 1.31 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 4527121 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 7592777 |
| 76 | 7592777 |
Insert Size Plot
| Insert Size Histogram |
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