/EXTERNAL BLUEPRINT/K011857_K011872_K011873_K011874_K011875_K011876_K011877_K011878_K011879_K011921_K011922_11_lane_gembs/EXTERNAL-K011875_1894817_2
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SAMPLE K011857_K011872_K011873_K011874_K011875_K011876_K011877_K011878_K011879_K011921_K011922_11_lane_gembs LANE EXTERNAL-K011875_1894817_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 15531922 | 100.00 % | 7765961 | 100.00 % | 7765961 | 100.00 % |
| General Reads | 11344168 | 73.04 % | 5764609 | 74.23 % | 5579559 | 71.85 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 2 | 0.00 % | 1 | 0.00 % | 1 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4187752 | 26.96 % | 2001351 | 25.77 % | 2186401 | 28.15 % |
| Bisulfite_reads C2T | 5831103 | 37.54 % | 2961884 | 38.14 % | 2869219 | 36.95 % |
| Bisulfite_reads G2A | 5513067 | 35.50 % | 2802726 | 36.09 % | 2710341 | 34.90 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 4411980 |
| Average Unique | 56.81 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 378521423 | 31.65 % | 162175830 | 27.12 % | 216345593 | 36.18 % |
| Base Counts Overall C | 206314099 | 17.25 % | 66073602 | 11.05 % | 140240497 | 23.45 % |
| Base Counts Overall G | 215287936 | 18.00 % | 144434515 | 24.15 % | 70853421 | 11.85 % |
| Base Counts Overall T | 380201213 | 31.79 % | 217471587 | 36.37 % | 162729626 | 27.21 % |
| Base Counts Overall N | 15633323 | 1.31 % | 7823463 | 1.31 % | 7809860 | 1.31 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 5417144 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 7765961 |
| 76 | 7765961 |
Insert Size Plot
| Insert Size Histogram |
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